Gm56934 Gene Detail

Summary

• Symbol
  Gm56934
• Name
  predicted gene, 56934

• Feature Type
  lncRNA gene
• IDs
  MGI:7337781
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr6:41531451-41532065 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337781	lncRNA gene	Chr6:41531451-41532065 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56934
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120647 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120647	Ensembl Gene Model | MGI Sequence Detail	615	C57BL/6J
transcript	ENSMUST00000244848	Ensembl | MGI Sequence Detail	615	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56934:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55958	Chr6:41530471-41530493 (+)	-969 bp
Tssr55959	Chr6:41530498-41530529 (+)	-937 bp
Tssr55960	Chr6:41530558-41530566 (+)	-889 bp
Tssr55961	Chr6:41531449-41531457 (+)	2 bp
Tssr55962	Chr6:41531655-41531676 (+)	215 bp
Tssr55963	Chr6:41531744-41531765 (+)	304 bp
Tssr55964	Chr6:41531788-41531799 (+)	343 bp