Gm56999 Gene Detail

Summary

• Symbol
  Gm56999
• Name
  predicted gene, 56999

• Feature Type
  lncRNA gene
• IDs
  MGI:7337911
• Alliance
  gene page
• Transcription Start Sites
  30 TSS

Location &
Maps

• Sequence Map
  Chr6:30782687-30785779 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337911	lncRNA gene	Chr6:30782687-30785779 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56999
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000121179 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121179	Ensembl Gene Model | MGI Sequence Detail	3093	C57BL/6J
transcript	ENSMUST00000247397	Ensembl | MGI Sequence Detail	3093	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56999:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55417	Chr6:30780756-30780771 (+)	-1,923 bp
Tssr55418	Chr6:30780852-30780864 (+)	-1,829 bp
Tssr55419	Chr6:30781035-30781044 (+)	-1,647 bp
Tssr55420	Chr6:30781120-30781144 (+)	-1,555 bp
Tssr55421	Chr6:30781233-30781246 (+)	-1,447 bp
Tssr55422	Chr6:30781730-30781752 (+)	-946 bp
Tssr55423	Chr6:30781754-30781759 (+)	-930 bp
Tssr55424	Chr6:30781769-30781776 (+)	-914 bp
Tssr55425	Chr6:30781813-30781822 (+)	-869 bp
Tssr55426	Chr6:30781835-30781849 (+)	-845 bp
Tssr55427	Chr6:30781884-30781900 (+)	-795 bp
Tssr55428	Chr6:30781905-30781915 (+)	-777 bp
Tssr55429	Chr6:30781918-30781941 (+)	-757 bp
Tssr1805	Chr6:30781945-30781950 (+)	-739 bp
Tssr55430	Chr6:30781966-30781979 (+)	-714 bp
Tssr55431	Chr6:30782001-30782015 (+)	-679 bp
Tssr55432	Chr6:30782100-30782111 (+)	-581 bp
Tssr55433	Chr6:30782121-30782130 (+)	-561 bp
Tssr55434	Chr6:30782137-30782147 (+)	-545 bp
Tssr55435	Chr6:30782362-30782377 (+)	-317 bp
Tssr55436	Chr6:30782392-30782402 (+)	-290 bp
Tssr55437	Chr6:30782470-30782481 (+)	-211 bp
Tssr55438	Chr6:30782545-30782559 (+)	-135 bp
Tssr55439	Chr6:30782592-30782601 (+)	-90 bp
Tssr55440	Chr6:30782674-30782693 (+)	-3 bp
Tssr55441	Chr6:30783152-30783172 (+)	475 bp
Tssr55442	Chr6:30783245-30783263 (+)	567 bp
Tssr55443	Chr6:30783330-30783344 (+)	650 bp
Tssr55444	Chr6:30783428-30783451 (+)	753 bp
Tssr55445	Chr6:30783478-30783518 (+)	811 bp