Gm57030 Gene Detail

Summary

• Symbol
  Gm57030
• Name
  predicted gene, 57030

• Feature Type
  lncRNA gene
• IDs
  MGI:7337973
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr9:123680356-123682450 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337973	lncRNA gene	Chr9:123680356-123682450 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57030
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120808 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120808	Ensembl Gene Model | MGI Sequence Detail	2095	C57BL/6J
transcript	ENSMUST00000245913	Ensembl | MGI Sequence Detail	2095	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57030:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87965	Chr9:123679351-123679367 (+)	-997 bp
Tssr87966	Chr9:123679386-123679398 (+)	-964 bp
Tssr87967	Chr9:123680103-123680138 (+)	-235 bp
Tssr87968	Chr9:123680313-123680348 (+)	-25 bp
Tssr87969	Chr9:123680349-123680379 (+)	8 bp
Tssr87970	Chr9:123680389-123680400 (+)	39 bp
Tssr87971	Chr9:123680448-123680496 (+)	116 bp
Tssr87972	Chr9:123681207-123681273 (+)	884 bp
Tssr87973	Chr9:123682425-123682431 (+)	2,072 bp