Gm57038 Gene Detail

Summary

• Symbol
  Gm57038
• Name
  predicted gene, 57038

• Feature Type
  lncRNA gene
• IDs
  MGI:7337989
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr9:37457286-37458211 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337989	lncRNA gene	Chr9:37457286-37458211 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57038
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120926 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120926	Ensembl Gene Model | MGI Sequence Detail	926	C57BL/6J
transcript	ENSMUST00000246530	Ensembl | MGI Sequence Detail	926	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57038:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84400	Chr9:37456249-37456254 (+)	-1,034 bp
Tssr84401	Chr9:37456291-37456302 (+)	-989 bp
Tssr84402	Chr9:37456336-37456343 (+)	-946 bp
Tssr84403	Chr9:37456357-37456362 (+)	-926 bp
Tssr84404	Chr9:37456401-37456418 (+)	-876 bp
Tssr84405	Chr9:37456436-37456446 (+)	-845 bp
Tssr84406	Chr9:37456470-37456477 (+)	-812 bp
Tssr84407	Chr9:37456519-37456539 (+)	-757 bp
Tssr84408	Chr9:37456547-37456569 (+)	-728 bp
Tssr84409	Chr9:37457235-37457243 (+)	-47 bp