Gm57078 Gene Detail

Summary

• Symbol
  Gm57078
• Name
  predicted gene, 57078

• Feature Type
  lncRNA gene
• IDs
  MGI:7338069
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr4:63327198-63328934 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338069	lncRNA gene	Chr4:63327198-63328934 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57078
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120352 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120352	Ensembl Gene Model | MGI Sequence Detail	1737	C57BL/6J
transcript	ENSMUST00000242721	Ensembl | MGI Sequence Detail	1737	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57078:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42052	Chr4:63328982-63328994 (-)	-54 bp
Tssr42051	Chr4:63328942-63328963 (-)	-19 bp
Tssr42050	Chr4:63328920-63328939 (-)	4 bp
Tssr42049	Chr4:63328451-63328468 (-)	474 bp
Tssr42048	Chr4:63328425-63328449 (-)	497 bp
Tssr42047	Chr4:63328247-63328261 (-)	680 bp
Tssr42046	Chr4:63328230-63328241 (-)	698 bp