Gm57084 Gene Detail

Summary

• Symbol
  Gm57084
• Name
  predicted gene, 57084

• Feature Type
  lncRNA gene
• IDs
  MGI:7338081
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr4:48024922-48043213 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  374 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338081	lncRNA gene	Chr4:48024922-48043213 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57084
  

Sequences &
Gene Models

• All Sequences
  6

• Ensembl
  ENSMUSG00000120048 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120048	Ensembl Gene Model | MGI Sequence Detail	18292	C57BL/6J
transcript	ENSMUST00000269443	Ensembl | MGI Sequence Detail	2036	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57084:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41632	Chr4:48044951-48044981 (-)	-1,753 bp
Tssr41631	Chr4:48044893-48044904 (-)	-1,686 bp
Tssr41630	Chr4:48043189-48043240 (-)	-2 bp
Tssr41629	Chr4:48042853-48042871 (-)	351 bp
Tssr41628	Chr4:48042526-48042532 (-)	684 bp
Tssr41627	Chr4:48042493-48042499 (-)	717 bp
Tssr41626	Chr4:48039810-48039817 (-)	3,399 bp
Tssr41625	Chr4:48039744-48039753 (-)	3,464 bp
Tssr41624	Chr4:48034455-48034498 (-)	8,736 bp