Gm57198 Gene Detail

Summary

• Symbol
  Gm57198
• Name
  predicted gene, 57198

• Feature Type
  lncRNA gene
• IDs
  MGI:7338309
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr7:16133534-16134828 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338309	lncRNA gene	Chr7:16133534-16134828 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57198
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120191 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120191	Ensembl Gene Model | MGI Sequence Detail	1295	C57BL/6J
transcript	ENSMUST00000241816	Ensembl | MGI Sequence Detail	1295	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm57198:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64603	Chr7:16133517-16133554 (+)	2 bp
Tssr64604	Chr7:16133955-16133986 (+)	437 bp
Tssr64605	Chr7:16133990-16134003 (+)	463 bp
Tssr64606	Chr7:16134032-16134043 (+)	504 bp
Tssr64607	Chr7:16134182-16134226 (+)	670 bp
Tssr64608	Chr7:16134229-16134256 (+)	709 bp