Gm57214 Gene Detail

Summary

• Symbol
  Gm57214
• Name
  predicted gene, 57214

• Feature Type
  lncRNA gene
• IDs
  MGI:7338341
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr7:28080088-28081397 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338341	lncRNA gene	Chr7:28080088-28081397 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57214
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120054 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120054	Ensembl Gene Model | MGI Sequence Detail	1310	C57BL/6J
transcript	ENSMUST00000241136	Ensembl | MGI Sequence Detail	1310	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57214:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71529	Chr7:28082549-28082575 (-)	-1,165 bp
Tssr71528	Chr7:28082401-28082416 (-)	-1,012 bp
Tssr2166	Chr7:28082320-28082331 (-)	-929 bp
Tssr71527	Chr7:28081537-28081570 (-)	-157 bp
Tssr71526	Chr7:28081357-28081368 (-)	34 bp
Tssr71525	Chr7:28081349-28081354 (-)	45 bp
Tssr71524	Chr7:28081303-28081324 (-)	83 bp
Tssr71523	Chr7:28080717-28080722 (-)	677 bp
Tssr71522	Chr7:28080493-28080512 (-)	894 bp
Tssr71521	Chr7:28080451-28080467 (-)	938 bp
Tssr71520	Chr7:28080439-28080446 (-)	954 bp
Tssr71519	Chr7:28080395-28080406 (-)	996 bp
Tssr71518	Chr7:28080374-28080379 (-)	1,020 bp
Tssr71517	Chr7:28080352-28080361 (-)	1,040 bp