Gm57269 Gene Detail

Summary

• Symbol
  Gm57269
• Name
  predicted gene, 57269

• Feature Type
  lncRNA gene
• IDs
  MGI:7338451
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr5:130199795-130200622 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338451	lncRNA gene	Chr5:130199795-130200622 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57269
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000119946 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119946	Ensembl Gene Model | MGI Sequence Detail	828	C57BL/6J
transcript	ENSMUST00000240782	Ensembl | MGI Sequence Detail	828	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57269:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53529	Chr5:130201437-130201447 (-)	-820 bp
Tssr53528	Chr5:130201414-130201426 (-)	-798 bp
Tssr53527	Chr5:130201303-130201312 (-)	-686 bp
Tssr53526	Chr5:130201251-130201281 (-)	-644 bp
Tssr53525	Chr5:130201189-130201203 (-)	-574 bp
Tssr53524	Chr5:130200565-130200589 (-)	45 bp
Tssr53523	Chr5:130200411-130200431 (-)	201 bp
Tssr53522	Chr5:130200382-130200409 (-)	226 bp