Gm57271 Gene Detail

Summary

• Symbol
  Gm57271
• Name
  predicted gene, 57271

• Feature Type
  lncRNA gene
• IDs
  MGI:7338455
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:125469601-125470127 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338455	lncRNA gene	Chr5:125469601-125470127 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57271
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120357 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120357	Ensembl Gene Model | MGI Sequence Detail	527	C57BL/6J
transcript	ENSMUST00000242770	Ensembl | MGI Sequence Detail	527	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57271:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53453	Chr5:125470389-125470403 (-)	-269 bp
Tssr53452	Chr5:125470377-125470385 (-)	-254 bp
Tssr53451	Chr5:125470114-125470130 (-)	5 bp
Tssr53450	Chr5:125470059-125470079 (-)	58 bp
Tssr53449	Chr5:125470022-125470039 (-)	96 bp
Tssr53448	Chr5:125470010-125470019 (-)	112 bp