Gm57291 Gene Detail

Summary

• Symbol
  Gm57291
• Name
  predicted gene, 57291

• Feature Type
  lncRNA gene
• IDs
  MGI:7338495
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:122640516-122641665 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338495	lncRNA gene	Chr5:122640516-122641665 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57291
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120573 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120573	Ensembl Gene Model | MGI Sequence Detail	1150	C57BL/6J
transcript	ENSMUST00000244264	Ensembl | MGI Sequence Detail	1150	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57291:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48697	Chr5:122638789-122638798 (+)	-1,722 bp
Tssr1626	Chr5:122638992-122638994 (+)	-1,523 bp
Tssr48698	Chr5:122639623-122639676 (+)	-866 bp
Tssr48699	Chr5:122639771-122639798 (+)	-731 bp
Tssr48700	Chr5:122639844-122639873 (+)	-657 bp
Tssr48701	Chr5:122640529-122640545 (+)	21 bp