Gm57342 Gene Detail

Summary

• Symbol
  Gm57342
• Name
  predicted gene, 57342

• Feature Type
  lncRNA gene
• IDs
  MGI:7338597
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:97200404-97201227 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338597	lncRNA gene	Chr11:97200404-97201227 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120452 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120452	Ensembl Gene Model | MGI Sequence Detail	824	C57BL/6J
transcript	ENSMUST00000243396	Ensembl | MGI Sequence Detail	824	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57342:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104608	Chr11:97200413-97200451 (+)	28 bp
Tssr104609	Chr11:97200471-97200485 (+)	74 bp
Tssr104610	Chr11:97200506-97200526 (+)	112 bp
Tssr104611	Chr11:97201042-97201051 (+)	643 bp
Tssr104612	Chr11:97201080-97201104 (+)	688 bp