Gm57354 Gene Detail

Summary

• Symbol
  Gm57354
• Name
  predicted gene, 57354

• Feature Type
  lncRNA gene
• IDs
  MGI:7338621
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr11:31820874-31821796 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338621	lncRNA gene	Chr11:31820874-31821796 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57354
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120081 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120081	Ensembl Gene Model | MGI Sequence Detail	923	C57BL/6J
transcript	ENSMUST00000241271	Ensembl | MGI Sequence Detail	923	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57354:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100781	Chr11:31820868-31820900 (+)	10 bp
Tssr100782	Chr11:31820901-31820923 (+)	38 bp
Tssr100783	Chr11:31821373-31821399 (+)	512 bp
Tssr100784	Chr11:31821411-31821420 (+)	542 bp
Tssr100785	Chr11:31821502-31821513 (+)	634 bp
Tssr100786	Chr11:31821522-31821533 (+)	654 bp