Gm57373 Gene Detail

Summary

• Symbol
  Gm57373
• Name
  predicted gene, 57373

• Feature Type
  lncRNA gene
• IDs
  MGI:7338659
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr11:101987133-101988888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338659	lncRNA gene	Chr11:101987133-101988888 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57373
  

Sequences &
Gene Models

• All Sequences
  10

• Ensembl
  ENSMUSG00000120019 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120019	Ensembl Gene Model | MGI Sequence Detail	1756	C57BL/6J
transcript	ENSMUST00000241117	Ensembl | MGI Sequence Detail	1056	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57373:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105178	Chr11:101987162-101987169 (+)	33 bp
Tssr105179	Chr11:101988032-101988062 (+)	914 bp
Tssr105180	Chr11:101988064-101988086 (+)	942 bp
Tssr105181	Chr11:101988089-101988117 (+)	970 bp
Tssr3680	Chr11:101988135-101988136 (+)	1,003 bp
Tssr3682	Chr11:101988319-101988324 (+)	1,189 bp
Tssr105182	Chr11:101988328-101988332 (+)	1,197 bp
Tssr105183	Chr11:101988339-101988344 (+)	1,209 bp
Tssr105184	Chr11:101988388-101988395 (+)	1,259 bp
Tssr105185	Chr11:101988671-101988675 (+)	1,540 bp