Gm57398 Gene Detail

Summary

• Symbol
  Gm57398
• Name
  predicted gene, 57398

• Feature Type
  lncRNA gene
• IDs
  MGI:7338709
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr11:99036042-99092219 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1696 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338709	lncRNA gene	Chr11:99036042-99092219 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57398
  

Sequences &
Gene Models

• All Sequences
  43

• Ensembl
  ENSMUSG00000121029 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121029	Ensembl Gene Model | MGI Sequence Detail	56178	C57BL/6J
transcript	ENSMUST00000301103	Ensembl | MGI Sequence Detail	1948	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57398:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104854	Chr11:99045998-99046011 (+)	9,963 bp
Tssr104855	Chr11:99046045-99046056 (+)	10,009 bp
Tssr104856	Chr11:99046057-99046070 (+)	10,022 bp
Tssr104857	Chr11:99046096-99046110 (+)	10,061 bp
Tssr104858	Chr11:99046139-99046148 (+)	10,102 bp
Tssr104859	Chr11:99046224-99046236 (+)	10,188 bp