Gm57426 Gene Detail

Summary

• Symbol
  Gm57426
• Name
  predicted gene, 57426

• Feature Type
  lncRNA gene
• IDs
  MGI:7338765
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr2:172907703-172916169 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  509 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338765	lncRNA gene	Chr2:172907703-172916169 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57426
  

Sequences &
Gene Models

• All Sequences
  5

• Ensembl
  ENSMUSG00000120642 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120642	Ensembl Gene Model | MGI Sequence Detail	8467	C57BL/6J
transcript	ENSMUST00000344997	Ensembl | MGI Sequence Detail	1296	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57426:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22003	Chr2:172907095-172907100 (+)	-605 bp
Tssr22004	Chr2:172907771-172907773 (+)	69 bp
Tssr22005	Chr2:172914964-172914968 (+)	7,263 bp
Tssr22006	Chr2:172914982-172914995 (+)	7,286 bp
Tssr22007	Chr2:172914999-172915011 (+)	7,302 bp
Tssr22008	Chr2:172915014-172915023 (+)	7,316 bp
Tssr22009	Chr2:172915032-172915047 (+)	7,337 bp
Tssr781	Chr2:172915069-172915076 (+)	7,370 bp
Tssr22010	Chr2:172915080-172915091 (+)	7,383 bp