Gm57439 Gene Detail

Summary

• Symbol
  Gm57439
• Name
  predicted gene, 57439

• Feature Type
  lncRNA gene
• IDs
  MGI:7338791
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr2:167862848-167892347 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  817 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338791	lncRNA gene	Chr2:167862848-167892347 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57439
  

Sequences &
Gene Models

• All Sequences
  10

• Ensembl
  ENSMUSG00000120957 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120957	Ensembl Gene Model | MGI Sequence Detail	29500	C57BL/6J
transcript	ENSMUST00000302326	Ensembl | MGI Sequence Detail	1050	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57439:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27824	Chr2:167893866-167893872 (-)	-1,522 bp
Tssr27823	Chr2:167892328-167892348 (-)	9 bp
Tssr27822	Chr2:167892309-167892320 (-)	32 bp
Tssr27821	Chr2:167892272-167892284 (-)	69 bp
Tssr27820	Chr2:167891996-167892001 (-)	348 bp
Tssr27819	Chr2:167881330-167881335 (-)	11,014 bp