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Hoxblinc Gene Detail
Summary
  • Symbol
    Hoxblinc
  • Name
    Hoxb locus associated lincRNA
  • Synonyms
    Gm57480, Hoxblinc
  • Feature Type
    lncRNA gene
  • IDs
    MGI:7511523
    NCBI Gene: 128462382
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:96206444-96209025 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 11, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    82 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_7511523
lncRNA gene Chr11:96206444-96209025 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Expression
less
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 128462382 NCBI Gene Model | MGI Sequence Detail 2582 C57BL/6J ±  kb
transcript NR_183915 RefSeq | MGI Sequence Detail 2582 C57BL/6  
For the selected sequence
Protein
Information
less
Other
Accession IDs
less
MGI:7569309
References
more
  • Summaries
    All 6
    Developmental Gene Expression 1
  • Earliest
    J:345498 Deng C, et al., HoxBlinc RNA Recruits Set1/MLL Complexes to Activate Hox Gene Expression Patterns and Mesoderm Lineage Development. Cell Rep. 2016 Jan 5;14(1):103-114
  • Latest
    J:336097 Afzal Z, et al., Shared retinoic acid responsive enhancers coordinately regulate nascent transcription of Hoxb coding and non-coding RNAs in the developing mouse neural tube. Development. 2023 May 15;150(10)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory