Gm57733 Gene Detail

Summary

• Symbol
  Gm57733
• Name
  predicted gene, 57733

• Feature Type
  lncRNA gene
• IDs
  MGI:7512421
  NCBI Gene: 115490137
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:124313464-124331353 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  509 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7512421	lncRNA gene	Chr5:124313464-124331353 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• NCBI Gene
  115490137

Representative Sequences			Length	Strain/Species
genomic	115490137	NCBI Gene Model | MGI Sequence Detail	17890	C57BL/6J
transcript	NR_165289	RefSeq | MGI Sequence Detail	8110	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm57733:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48847	Chr5:124313458-124313471 (+)	1 bp
Tssr48848	Chr5:124313477-124313493 (+)	21 bp
Tssr48849	Chr5:124323566-124323576 (+)	10,107 bp
Tssr1632	Chr5:124324714-124324739 (+)	11,263 bp
Tssr48850	Chr5:124325195-124325200 (+)	11,734 bp