Gm57822 Gene Detail

Summary

• Symbol
  Gm57822
• Name
  predicted gene, 57822

• Feature Type
  lncRNA gene
• IDs
  MGI:7512594
  NCBI Gene: 118568377
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr18:15327772-15342121 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  486 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7512594	lncRNA gene	Chr18:15327772-15342121 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118568377

Representative Sequences			Length	Strain/Species
genomic	118568377	NCBI Gene Model | MGI Sequence Detail	14350	C57BL/6J
transcript	XR_004939982	RefSeq | MGI Sequence Detail	2897	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm57822:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150140	Chr18:15327525-15327540 (+)	-239 bp
Tssr5250	Chr18:15327809-15327822 (+)	44 bp
Tssr150141	Chr18:15328261-15328306 (+)	512 bp
Tssr150142	Chr18:15328307-15328318 (+)	541 bp
Tssr150143	Chr18:15328323-15328334 (+)	557 bp
Tssr150144	Chr18:15328430-15328441 (+)	664 bp
Tssr150145	Chr18:15328445-15328467 (+)	684 bp