Gm57827 Gene Detail

Summary

• Symbol
  Gm57827
• Name
  predicted gene, 57827

• Feature Type
  lncRNA gene
• IDs
  MGI:7512604
  NCBI Gene: 118568405
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr19:12495325-12517241 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  350 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7512604	lncRNA gene	Chr19:12495325-12517241 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118568405

Representative Sequences			Length	Strain/Species
genomic	118568405	NCBI Gene Model | MGI Sequence Detail	21917	C57BL/6J
transcript	XR_004940250	RefSeq | MGI Sequence Detail	1334	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm57827:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158439	Chr19:12505566-12505580 (-)	11,668 bp
Tssr158438	Chr19:12504923-12504941 (-)	12,309 bp
Tssr158437	Chr19:12504907-12504922 (-)	12,326 bp
Tssr158436	Chr19:12504459-12504468 (-)	12,777 bp
Tssr158435	Chr19:12503787-12503805 (-)	13,445 bp
Tssr158434	Chr19:12503745-12503756 (-)	13,490 bp