Gm57848 Gene Detail

Summary

• Symbol
  Gm57848
• Name
  predicted gene, 57848

• Feature Type
  protein coding gene
• IDs
  MGI:7512643
  NCBI Gene: 122152371
• Alliance
  gene page
• Transcription Start Sites
  21 TSS

Location &
Maps

• Sequence Map
  Chr5:137744274-137766715 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  582 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7512643	protein coding gene	Chr5:137744274-137766715 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2
• CCDS
  CCDS57393.1

• NCBI Gene
  122152371

Representative Sequences			Length	Strain/Species
genomic	122152371	NCBI Gene Model | MGI Sequence Detail	22442	C57BL/6J
transcript	NM_029805	RefSeq | MGI Sequence Detail	2451	C57BL/6
polypeptide	NP_084081	RefSeq | MGI Sequence Detail	509	C57BL/6

References

• Summaries
  All 9
• Earliest
  J:72913 Fiorenza MT, et al., Expression screening for Lhx3 downstream genes identifies Thg-1pit as a novel mouse gene involved in pituitary development. Gene. 2001 Oct 31;278(1-2):125-30
• Latest
  J:331466 Jones A, et al., TSC22D4 is a molecular output of hepatic wasting metabolism. EMBO Mol Med. 2013 Feb;5(2):294-308

TSS for Gm57848:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49366	Chr5:137744013-137744059 (+)	-238 bp
Tssr49367	Chr5:137744215-137744226 (+)	-53 bp
Tssr49368	Chr5:137744229-137744289 (+)	-15 bp
Tssr49369	Chr5:137744375-137744440 (+)	134 bp
Tssr49370	Chr5:137744445-137744456 (+)	177 bp
Tssr49371	Chr5:137744500-137744511 (+)	232 bp
Tssr49372	Chr5:137744617-137744636 (+)	353 bp
Tssr49373	Chr5:137744809-137744879 (+)	570 bp
Tssr49374	Chr5:137744901-137744913 (+)	633 bp
Tssr49375	Chr5:137744952-137744963 (+)	684 bp
Tssr49376	Chr5:137745147-137745179 (+)	889 bp
Tssr49377	Chr5:137745214-137745237 (+)	952 bp
Tssr49378	Chr5:137745328-137745351 (+)	1,066 bp
Tssr49379	Chr5:137745773-137745795 (+)	1,510 bp
Tssr49380	Chr5:137745870-137745904 (+)	1,613 bp
Tssr49381	Chr5:137745905-137745946 (+)	1,652 bp
Tssr49382	Chr5:137745976-137745996 (+)	1,712 bp
Tssr49383	Chr5:137747228-137747232 (+)	2,956 bp
Tssr49384	Chr5:137756373-137756380 (+)	12,103 bp
Tssr49385	Chr5:137756395-137756475 (+)	12,161 bp
Tssr49386	Chr5:137756515-137756525 (+)	12,246 bp