Gm57853 Gene Detail

Summary

• Symbol
  Gm57853
• Name
  predicted gene, 57853

• Feature Type
  protein coding gene
• IDs
  MGI:7512653
  NCBI Gene: 128900018
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr3:90520491-90565976 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1436 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7512653	protein coding gene	Chr3:90520491-90565976 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  7

• NCBI Gene
  128900018

Representative Sequences			Length	Strain/Species
genomic	128900018	NCBI Gene Model | MGI Sequence Detail	45486	C57BL/6J
transcript	NM_001417959	RefSeq | MGI Sequence Detail	2083	C57BL/6
polypeptide	NP_001404890	RefSeq | MGI Sequence Detail	108	C57BL/6

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm57853:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30246	Chr3:90520453-90520464 (+)	-32 bp
Tssr30247	Chr3:90520483-90520499 (+)	0 bp
Tssr30248	Chr3:90520589-90520599 (+)	103 bp
Tssr30249	Chr3:90520826-90520843 (+)	344 bp
Tssr30250	Chr3:90521035-90521076 (+)	565 bp
Tssr30251	Chr3:90521082-90521160 (+)	630 bp
Tssr30252	Chr3:90521653-90521664 (+)	1,168 bp
Tssr30253	Chr3:90521677-90521690 (+)	1,193 bp
Tssr30254	Chr3:90530978-90530996 (+)	10,496 bp