Gm57855 Gene Detail

Summary

• Symbol
  Gm57855
• Name
  predicted gene, 57855

• Feature Type
  protein coding gene
• IDs
  MGI:7512657
  NCBI Gene: 129167829
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr6:52200077-52217658 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7512657	protein coding gene	Chr6:52200077-52217658 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  129167829

Representative Sequences			Length	Strain/Species
genomic	129167829	NCBI Gene Model | MGI Sequence Detail	17582	C57BL/6J
transcript	NR_185082	RefSeq | MGI Sequence Detail	1705	C57BL/6
polypeptide	NP_001406347	RefSeq | MGI Sequence Detail	112	C57BL/6

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm57855:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61028	Chr6:52217839-52217854 (-)	-189 bp
Tssr61027	Chr6:52217821-52217834 (-)	-170 bp
Tssr61026	Chr6:52217741-52217748 (-)	-87 bp
Tssr61025	Chr6:52217649-52217663 (-)	2 bp
Tssr61024	Chr6:52217637-52217648 (-)	15 bp
Tssr1846	Chr6:52217618-52217623 (-)	37 bp
Tssr61023	Chr6:52217448-52217481 (-)	193 bp
Tssr61022	Chr6:52211882-52211940 (-)	5,747 bp
Tssr61021	Chr6:52211861-52211874 (-)	5,790 bp
Tssr61020	Chr6:52211797-52211805 (-)	5,857 bp
Tssr61019	Chr6:52211206-52211217 (-)	6,446 bp
Tssr1845	Chr6:52210968-52210976 (-)	6,686 bp
Tssr61018	Chr6:52210463-52210467 (-)	7,193 bp
Tssr61017	Chr6:52210163-52210174 (-)	7,489 bp