Spacdr Gene Detail

Summary

• Symbol
  Spacdr
• Name
  sperm acrosome developmental regulator

• Feature Type
  protein coding gene
• IDs
  MGI:7523879
  NCBI Gene: 122152370
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:137759963-137766715 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  263 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7523879	protein coding gene	Chr5:137759963-137766715 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  122152370

Representative Sequences			Length	Strain/Species
genomic	122152370	NCBI Gene Model | MGI Sequence Detail	6753	C57BL/6J
polypeptide	NP_001382683	RefSeq | MGI Sequence Detail	210	C57BL/6

Other
Accession IDs

MGI:7512641

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:118536 Fiol DF, et al., Specific TSC22 domain transcripts are hypertonically induced and alternatively spliced to protect mouse kidney cells during osmotic stress. FEBS J. 2007 Jan;274(1):109-24
• Latest
  J:242722 Ekim Ustunel B, et al., Control of diabetic hyperglycaemia and insulin resistance through TSC22D4. Nat Commun. 2016 Nov 09;7:13267

TSS for Spacdr:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49387	Chr5:137759938-137759941 (+)	-23 bp
Tssr49388	Chr5:137759942-137759976 (+)	-4 bp