Cd36ot1 Gene Detail

Summary

• Symbol
  Cd36ot1
• Name
  CD36 molecule overlapping transcript 1

• Feature Type
  sense overlapping lncRNA gene
• IDs
  MGI:7540921
  NCBI Gene: 132660284
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr5:18051304-18054787 bp, - strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7540921	sense overlapping lncRNA gene	Chr5:18051304-18054787 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  132660284

Representative Sequences			Length	Strain/Species
transcript	AK142643	GenBank | ENA | DDBJ | MGI Sequence Detail	3486	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:340598 Wang P, et al., LncRNA AK142643 promotes hepatic lipid accumulation by upregulating CD36 via interacting with IGF2BP2. Gene. 2023 Aug 29;887:147747

TSS for Cd36ot1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50205	Chr5:18054781-18054792 (-)	0 bp
Tssr50204	Chr5:18054735-18054779 (-)	30 bp
Tssr50203	Chr5:18054702-18054733 (-)	69 bp
Tssr50202	Chr5:18054686-18054701 (-)	93 bp
Tssr50201	Chr5:18053919-18053940 (-)	857 bp
Tssr50200	Chr5:18052858-18052868 (-)	1,924 bp
Tssr50199	Chr5:18052803-18052829 (-)	1,971 bp
Tssr50198	Chr5:18052770-18052788 (-)	2,008 bp