Mir155hgit Gene Detail

Summary

• Symbol
  Mir155hgit
• Name
  Mir155 host gene intronic transcript
• Synonyms
  linc-AAM

• Feature Type
  lncRNA gene
• IDs
  MGI:7568814
  NCBI Gene: 133834866
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:84503480-84505443 bp, + strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7568814	lncRNA gene	Chr16:84503480-84505443 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  133834866

Representative Sequences			Length	Strain/Species
transcript	MK165660	GenBank | ENA | DDBJ | MGI Sequence Detail	1964	Not Specified

References

• Summaries
  All 3
• Earliest
  J:303644 Chen X, et al., linc-AAM Facilitates Gene Expression Contributing to Macrophage Activation and Adaptive Immune Responses. Cell Rep. 2021 Jan 5;34(1):108584

TSS for Mir155hgit:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139159	Chr16:84502454-84502468 (+)	-1,019 bp
Tssr139160	Chr16:84502532-84502536 (+)	-946 bp
Tssr139161	Chr16:84502764-84502773 (+)	-711 bp