Rr549 Other Genome Feature Detail

Summary

• Symbol
  Rr549
• Name
  regulatory region 549
• Synonyms
  SCR, Sox2-SE^distal

• Feature Type
  enhancer
• IDs
  MGI:7716895
• Cluster Members
  Rr80450, Rr80451, Rr552 ... (6 members)

Location &
Maps

• Sequence Map
  Chr3:34806891-34820933 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI
• chr3:34806891-34820933 (GRCm39)

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  587 from dbSNP Build 142

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  0 strains or lines available

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:225130 Li Y, et al., CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells. PLoS One. 2014;9(12):e114485
• Latest
  J:342647 Chakraborty S, et al., Enhancer-promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness. Nat Genet. 2023 Feb;55(2):280-290

Rr549 Cluster contains:

More Data for these features

Member	Feature Type	Location
Rr80450, regulatory region 80450	enhancer	Chr3:34807601-34808400 (.)
Rr80451, regulatory region 80451	enhancer	Chr3:34809401-34809600 (.)
Rr552, regulatory region 552	enhancer	Chr3:34811171-34813227
Rr80452, regulatory region 80452	enhancer	Chr3:34813401-34813600 (.)
Rr67142, regulatory region 67142	CTCF binding site	Chr3:34814001-34814400 (.)
Rr553, regulatory region 553	enhancer	Chr3:34814797-34816427