Gm57952 Gene Detail

Summary

• Symbol
  Gm57952
• Name
  predicted gene, 57952

• Feature Type
  lncRNA gene
• IDs
  MGI:7799031
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  ChrY:90734917-90750535 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome Y, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7799031	lncRNA gene	ChrY:90734917-90750535 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57952
  

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000129048 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000129048	Ensembl Gene Model | MGI Sequence Detail	15619	C57BL/6J
transcript	ENSMUST00000291473	Ensembl | MGI Sequence Detail	2154	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57952:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5752	ChrY:90745789-90745799 (+)	10,877 bp
Tssr5753	ChrY:90748795-90748808 (+)	13,885 bp
Tssr5754	ChrY:90749010-90749046 (+)	14,111 bp
Tssr5756	ChrY:90749101-90749112 (+)	14,190 bp
Tssr5757	ChrY:90749130-90749149 (+)	14,223 bp
Tssr5758	ChrY:90749177-90749189 (+)	14,266 bp