Gm58505 Gene Detail

Summary

• Symbol
  Gm58505
• Name
  predicted gene, 58505

• Feature Type
  lncRNA gene
• IDs
  MGI:7800095
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr18:56809686-56810024 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7800095	lncRNA gene	Chr18:56809686-56810024 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm58505
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000128238 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000128238	Ensembl Gene Model | MGI Sequence Detail	339	C57BL/6J
transcript	ENSMUST00000286472	Ensembl | MGI Sequence Detail	339	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm58505:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151149	Chr18:56808763-56808770 (+)	-919 bp
Tssr151150	Chr18:56809353-56809358 (+)	-330 bp
Tssr151151	Chr18:56809679-56809691 (+)	-1 bp
Tssr151152	Chr18:56809693-56809696 (+)	9 bp
Tssr151153	Chr18:56809721-56809732 (+)	41 bp
Tssr151154	Chr18:56809734-56809766 (+)	64 bp
Tssr151155	Chr18:56809770-56809797 (+)	98 bp