Gm58563 Gene Detail

Summary

• Symbol
  Gm58563
• Name
  predicted gene, 58563

• Feature Type
  lncRNA gene
• IDs
  MGI:7800211
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr18:23443123-23486814 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1208 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7800211	lncRNA gene	Chr18:23443123-23486814 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm58563
  

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000131183 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000131183	Ensembl Gene Model | MGI Sequence Detail	43692	C57BL/6J
transcript	ENSMUST00000304616	Ensembl | MGI Sequence Detail	1462	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm58563:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150244	Chr18:23443104-23443196 (+)	27 bp
Tssr150245	Chr18:23443197-23443230 (+)	91 bp
Tssr150246	Chr18:23443237-23443259 (+)	125 bp
Tssr150247	Chr18:23466776-23466788 (+)	23,659 bp
Tssr150248	Chr18:23485645-23485671 (+)	42,535 bp
Tssr150249	Chr18:23485672-23485677 (+)	42,552 bp