Gm58579 Gene Detail

Summary

• Symbol
  Gm58579
• Name
  predicted gene, 58579

• Feature Type
  lncRNA gene
• IDs
  MGI:7800243
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr18:21095479-21095690 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7800243	lncRNA gene	Chr18:21095479-21095690 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm58579
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000132056 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000132056	Ensembl Gene Model | MGI Sequence Detail	212	C57BL/6J
transcript	ENSMUST00000309900	Ensembl | MGI Sequence Detail	212	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm58579:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150199	Chr18:21094299-21094306 (+)	-1,176 bp
Tssr150200	Chr18:21094313-21094324 (+)	-1,160 bp
Tssr150201	Chr18:21094333-21094347 (+)	-1,139 bp
Tssr150202	Chr18:21094359-21094407 (+)	-1,096 bp
Tssr150203	Chr18:21094413-21094438 (+)	-1,053 bp
Tssr150204	Chr18:21094480-21094524 (+)	-977 bp
Tssr150205	Chr18:21094537-21094568 (+)	-926 bp
Tssr150206	Chr18:21094624-21094646 (+)	-844 bp
Tssr150207	Chr18:21094651-21094694 (+)	-806 bp
Tssr150208	Chr18:21094802-21094811 (+)	-672 bp
Tssr150209	Chr18:21095506-21095522 (+)	35 bp