Gm58691 Gene Detail

Summary

• Symbol
  Gm58691
• Name
  predicted gene, 58691

• Feature Type
  lncRNA gene
• IDs
  MGI:7800465
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr18:33928620-33968305 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1604 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7800465	lncRNA gene	Chr18:33928620-33968305 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm58691
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000136208 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000136208	Ensembl Gene Model | MGI Sequence Detail	39686	C57BL/6J
transcript	ENSMUST00000334763	Ensembl | MGI Sequence Detail	438	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm58691:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152775	Chr18:33965905-33965914 (-)	2,395 bp
Tssr152774	Chr18:33965854-33965882 (-)	2,437 bp
Tssr152773	Chr18:33965837-33965853 (-)	2,460 bp
Tssr152772	Chr18:33965794-33965809 (-)	2,503 bp
Tssr152771	Chr18:33958822-33958843 (-)	9,472 bp
Tssr152770	Chr18:33942248-33942252 (-)	26,055 bp