Gm58731 Gene Detail

Summary

• Symbol
  Gm58731
• Name
  predicted gene, 58731

• Feature Type
  lncRNA gene
• IDs
  MGI:7800543
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr18:80383887-80406057 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  760 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7800543	lncRNA gene	Chr18:80383887-80406057 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm58731
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000137902 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000137902	Ensembl Gene Model | MGI Sequence Detail	22171	C57BL/6J
transcript	ENSMUST00000344286	Ensembl | MGI Sequence Detail	201	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm58731:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154021	Chr18:80396978-80396982 (-)	9,077 bp
Tssr154020	Chr18:80389284-80389304 (-)	16,763 bp
Tssr154019	Chr18:80389060-80389095 (-)	16,979 bp
Tssr154018	Chr18:80388951-80388960 (-)	17,101 bp
Tssr154017	Chr18:80384196-80384199 (-)	21,859 bp