Gm59209 Gene Detail

Summary

• Symbol
  Gm59209
• Name
  predicted gene, 59209

• Feature Type
  lncRNA gene
• IDs
  MGI:7801491
• Alliance
  gene page
• Transcription Start Sites
  13 TSS

Location &
Maps

• Sequence Map
  Chr19:47845703-47853851 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  440 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7801491	lncRNA gene	Chr19:47845703-47853851 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm59209
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000135557 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000135557	Ensembl Gene Model | MGI Sequence Detail	8149	C57BL/6J
transcript	ENSMUST00000330842	Ensembl | MGI Sequence Detail	982	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm59209:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159774	Chr19:47853391-47853397 (-)	457 bp
Tssr159773	Chr19:47853218-47853228 (-)	628 bp
Tssr159772	Chr19:47853078-47853097 (-)	763 bp
Tssr159771	Chr19:47852944-47852955 (-)	901 bp
Tssr159770	Chr19:47852876-47852901 (-)	962 bp
Tssr159769	Chr19:47852853-47852871 (-)	989 bp
Tssr159768	Chr19:47851904-47851928 (-)	1,935 bp
Tssr159767	Chr19:47851840-47851865 (-)	1,998 bp
Tssr159766	Chr19:47847932-47847978 (-)	5,896 bp
Tssr159765	Chr19:47847900-47847924 (-)	5,939 bp
Tssr159764	Chr19:47846473-47846503 (-)	7,363 bp
Tssr159763	Chr19:47846431-47846467 (-)	7,402 bp
Tssr159762	Chr19:47846326-47846335 (-)	7,520 bp