Gm60535 Gene Detail

Summary

• Symbol
  Gm60535
• Name
  predicted gene, 60535

• Feature Type
  lncRNA gene
• IDs
  MGI:7804121
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr13:24723636-24788908 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2119 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7804121	lncRNA gene	Chr13:24723636-24788908 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm60535
  

Sequences &
Gene Models

• All Sequences
  6

• Ensembl
  ENSMUSG00000121648 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121648	Ensembl Gene Model | MGI Sequence Detail	65273	C57BL/6J
transcript	ENSMUST00000149751	Ensembl | MGI Sequence Detail	2893	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm60535:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121801	Chr13:24788772-24788778 (-)	133 bp
Tssr121800	Chr13:24788197-24788214 (-)	702 bp
Tssr121799	Chr13:24787875-24787887 (-)	1,027 bp
Tssr121798	Chr13:24787851-24787869 (-)	1,048 bp
Tssr121797	Chr13:24787842-24787850 (-)	1,062 bp
Tssr121796	Chr13:24787777-24787788 (-)	1,125 bp