Gm60685 Gene Detail

Summary

• Symbol
  Gm60685
• Name
  predicted gene, 60685

• Feature Type
  lncRNA gene
• IDs
  MGI:7804415
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr16:49676600-49677371 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7804415	lncRNA gene	Chr16:49676600-49677371 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm60685
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000135280 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000135280	Ensembl Gene Model | MGI Sequence Detail	772	C57BL/6J
transcript	ENSMUST00000329333	Ensembl | MGI Sequence Detail	772	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm60685:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138728	Chr16:49675712-49675723 (+)	-882 bp
Tssr4901	Chr16:49675733-49675750 (+)	-858 bp
Tssr4902	Chr16:49675848-49675860 (+)	-746 bp
Tssr138729	Chr16:49675987-49676085 (+)	-564 bp
Tssr138730	Chr16:49676108-49676119 (+)	-486 bp
Tssr4903	Chr16:49676130-49676169 (+)	-450 bp
Tssr138731	Chr16:49676435-49676475 (+)	-145 bp
Tssr138732	Chr16:49676581-49676613 (+)	-3 bp
Tssr138733	Chr16:49676669-49676694 (+)	82 bp
Tssr138734	Chr16:49676921-49676932 (+)	327 bp
Tssr138735	Chr16:49676959-49676982 (+)	371 bp