Gm60965 Gene Detail

Summary

• Symbol
  Gm60965
• Name
  predicted gene, 60965

• Feature Type
  lncRNA gene
• IDs
  MGI:7804975
• Alliance
  gene page
• Transcription Start Sites
  16 TSS

Location &
Maps

• Sequence Map
  Chr16:84500345-84507099 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  379 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7804975	lncRNA gene	Chr16:84500345-84507099 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm60965
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000138952 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000138952	Ensembl Gene Model | MGI Sequence Detail	6755	C57BL/6J
transcript	ENSMUST00000350501	Ensembl | MGI Sequence Detail	937	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm60965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139152	Chr16:84498934-84498940 (+)	-1,408 bp
Tssr139153	Chr16:84499051-84499070 (+)	-1,284 bp
Tssr139154	Chr16:84499888-84499905 (+)	-448 bp
Tssr139155	Chr16:84500212-84500229 (+)	-124 bp
Tssr139156	Chr16:84500455-84500466 (+)	116 bp
Tssr139157	Chr16:84500504-84500551 (+)	183 bp
Tssr139158	Chr16:84500736-84500757 (+)	402 bp
Tssr139159	Chr16:84502454-84502468 (+)	2,116 bp
Tssr139160	Chr16:84502532-84502536 (+)	2,189 bp
Tssr139161	Chr16:84502764-84502773 (+)	2,424 bp
Tssr139162	Chr16:84505762-84505777 (+)	5,425 bp
Tssr139163	Chr16:84505938-84505946 (+)	5,597 bp
Tssr139164	Chr16:84506208-84506220 (+)	5,869 bp
Tssr139165	Chr16:84506237-84506258 (+)	5,903 bp
Tssr139166	Chr16:84506270-84506282 (+)	5,931 bp
Tssr139167	Chr16:84506793-84506798 (+)	6,451 bp