Gm62435 Gene Detail

Summary

• Symbol
  Gm62435
• Name
  predicted gene, 62435

• Feature Type
  lncRNA gene
• IDs
  MGI:7807830
• Alliance
  gene page
• Transcription Start Sites
  15 TSS

Location &
Maps

• Sequence Map
  Chr15:74704606-74705293 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7807830	lncRNA gene	Chr15:74704606-74705293 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm62435
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000129375 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000129375	Ensembl Gene Model | MGI Sequence Detail	688	C57BL/6J
transcript	ENSMUST00000293235	Ensembl | MGI Sequence Detail	688	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm62435:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134784	Chr15:74706592-74706603 (-)	-1,305 bp
Tssr134783	Chr15:74706557-74706568 (-)	-1,270 bp
Tssr134782	Chr15:74706534-74706553 (-)	-1,251 bp
Tssr134781	Chr15:74706510-74706524 (-)	-1,224 bp
Tssr134780	Chr15:74706447-74706492 (-)	-1,177 bp
Tssr134779	Chr15:74706385-74706400 (-)	-1,100 bp
Tssr134778	Chr15:74705656-74705673 (-)	-372 bp
Tssr134777	Chr15:74705576-74705587 (-)	-289 bp
Tssr134776	Chr15:74705547-74705557 (-)	-259 bp
Tssr134775	Chr15:74705522-74705531 (-)	-234 bp
Tssr134774	Chr15:74705388-74705407 (-)	-105 bp
Tssr134773	Chr15:74705360-74705373 (-)	-74 bp
Tssr134772	Chr15:74705333-74705346 (-)	-47 bp
Tssr134771	Chr15:74705317-74705325 (-)	-28 bp
Tssr134770	Chr15:74704680-74704692 (-)	607 bp