Gm62589 Gene Detail

Summary

• Symbol
  Gm62589
• Name
  predicted gene, 62589

• Feature Type
  lncRNA gene
• IDs
  MGI:7808132
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:102313513-102314176 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7808132	lncRNA gene	Chr15:102313513-102314176 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm62589
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000131830 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000131830	Ensembl Gene Model | MGI Sequence Detail	664	C57BL/6J
transcript	ENSMUST00000308564	Ensembl | MGI Sequence Detail	664	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm62589:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr136697	Chr15:102314123-102314137 (-)	46 bp
Tssr136696	Chr15:102314010-102314055 (-)	143 bp
Tssr136695	Chr15:102313979-102314008 (-)	182 bp
Tssr136694	Chr15:102313939-102313956 (-)	228 bp