Gm64662 Gene Detail

Summary

• Symbol
  Gm64662
• Name
  predicted gene, 64662

• Feature Type
  lncRNA gene
• IDs
  MGI:7812231
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr3:34702535-34704014 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7812231	lncRNA gene	Chr3:34702535-34704014 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm64662
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000126112 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000126112	Ensembl Gene Model | MGI Sequence Detail	1480	C57BL/6J
transcript	ENSMUST00000274425	Ensembl | MGI Sequence Detail	1480	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm64662:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32981	Chr3:34705185-34705196 (-)	-1,177 bp
Tssr32980	Chr3:34704863-34704869 (-)	-852 bp
Tssr32979	Chr3:34703996-34704024 (-)	4 bp
Tssr32978	Chr3:34703905-34703918 (-)	102 bp
Tssr32977	Chr3:34703873-34703884 (-)	135 bp
Tssr32976	Chr3:34703101-34703112 (-)	907 bp
Tssr32975	Chr3:34702634-34702638 (-)	1,378 bp