Gm64833 Gene Detail

Summary

• Symbol
  Gm64833
• Name
  predicted gene, 64833

• Feature Type
  lncRNA gene
• IDs
  MGI:7812569
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr8:13107478-13107954 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7812569	lncRNA gene	Chr8:13107478-13107954 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm64833
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000144006 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000144006	Ensembl Gene Model | MGI Sequence Detail	477	C57BL/6J
transcript	ENSMUST00000380698	Ensembl | MGI Sequence Detail	364	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm64833:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76339	Chr8:13105674-13105681 (+)	-1,800 bp
Tssr76340	Chr8:13105832-13105843 (+)	-1,640 bp
Tssr2495	Chr8:13105848-13105853 (+)	-1,627 bp
Tssr76341	Chr8:13105954-13105966 (+)	-1,518 bp
Tssr76342	Chr8:13105977-13105988 (+)	-1,495 bp
Tssr76343	Chr8:13106027-13106036 (+)	-1,446 bp
Tssr76344	Chr8:13106148-13106156 (+)	-1,326 bp
Tssr76345	Chr8:13106157-13106175 (+)	-1,312 bp