Gm64841 Gene Detail

Summary

• Symbol
  Gm64841
• Name
  predicted gene, 64841

• Feature Type
  lncRNA gene
• IDs
  MGI:7812585
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr8:85376998-85387359 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7812585	lncRNA gene	Chr8:85376998-85387359 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm64841
  

Sequences &
Gene Models

• All Sequences
  7

• Ensembl
  ENSMUSG00000125578 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000125578	Ensembl Gene Model | MGI Sequence Detail	10362	C57BL/6J
transcript	ENSMUST00000271090	Ensembl | MGI Sequence Detail	1124	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm64841:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78418	Chr8:85376994-85377002 (+)	0 bp
Tssr78420	Chr8:85384577-85384580 (+)	7,581 bp
Tssr78421	Chr8:85386827-85386834 (+)	9,833 bp
Tssr78422	Chr8:85386842-85386853 (+)	9,850 bp
Tssr78423	Chr8:85387032-85387051 (+)	10,044 bp