Gm66079 Gene Detail

Summary

• Symbol
  Gm66079
• Name
  predicted gene, 66079

• Feature Type
  lncRNA gene
• IDs
  MGI:7815029
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr10:80581679-80591662 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  270 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7815029	lncRNA gene	Chr10:80581679-80591662 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm66079
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000124025 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000124025	Ensembl Gene Model | MGI Sequence Detail	9984	C57BL/6J
transcript	ENSMUST00000261684	Ensembl | MGI Sequence Detail	373	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm66079:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98505	Chr10:80593004-80593044 (-)	-1,362 bp
Tssr98504	Chr10:80592961-80592982 (-)	-1,310 bp
Tssr98503	Chr10:80592827-80592840 (-)	-1,172 bp
Tssr98502	Chr10:80592793-80592807 (-)	-1,138 bp
Tssr98501	Chr10:80590748-80590772 (-)	902 bp
Tssr98500	Chr10:80590500-80590505 (-)	1,159 bp