Gm66392 Gene Detail

Summary

• Symbol
  Gm66392
• Name
  predicted gene, 66392

• Feature Type
  lncRNA gene
• IDs
  MGI:7815646
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr6:35154778-35155656 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7815646	lncRNA gene	Chr6:35154778-35155656 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm66392
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000123845 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000123845	Ensembl Gene Model | MGI Sequence Detail	879	C57BL/6J
transcript	ENSMUST00000260495	Ensembl | MGI Sequence Detail	879	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm66392:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55577	Chr6:35154653-35154693 (+)	-105 bp
Tssr55578	Chr6:35154749-35154761 (+)	-23 bp
Tssr55579	Chr6:35154776-35154795 (+)	8 bp
Tssr55580	Chr6:35154830-35154871 (+)	73 bp
Tssr55581	Chr6:35155039-35155049 (+)	266 bp
Tssr55582	Chr6:35155054-35155074 (+)	286 bp