Gm66556 Gene Detail

Summary

• Symbol
  Gm66556
• Name
  predicted gene, 66556

• Feature Type
  lncRNA gene
• IDs
  MGI:7815967
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:38306585-38366815 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7815967	lncRNA gene	Chr17:38306585-38366815 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm66556
  

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000123649 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000123649	Ensembl Gene Model | MGI Sequence Detail	60231	C57BL/6J
transcript	ENSMUST00000259363	Ensembl | MGI Sequence Detail	2305	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm66556:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144593	Chr17:38306748-38306779 (+)	179 bp
Tssr144594	Chr17:38306784-38306804 (+)	209 bp
Tssr144595	Chr17:38308219-38308221 (+)	1,635 bp