Gm69486 Gene Detail

Summary

• Symbol
  Gm69486
• Name
  predicted gene, 69486

• Feature Type
  lncRNA gene
• IDs
  MGI:7821787
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:154975487-154993133 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  397 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7821787	lncRNA gene	Chr1:154975487-154993133 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm69486
  

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000122848 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000122848	Ensembl Gene Model | MGI Sequence Detail	17647	C57BL/6J
transcript	ENSMUST00000255115	Ensembl | MGI Sequence Detail	934	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm69486:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9525	Chr1:154973939-154973977 (+)	-1,529 bp
Tssr9526	Chr1:154973979-154974005 (+)	-1,495 bp
Tssr9527	Chr1:154974030-154974042 (+)	-1,451 bp
Tssr9528	Chr1:154980712-154980714 (+)	5,226 bp
Tssr9529	Chr1:154992814-154992817 (+)	17,329 bp