Gm69500 Gene Detail

Summary

• Symbol
  Gm69500
• Name
  predicted gene, 69500

• Feature Type
  lncRNA gene
• IDs
  MGI:7821815
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:60938840-60959702 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  226 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7821815	lncRNA gene	Chr1:60938840-60959702 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm69500
  

Sequences &
Gene Models

• All Sequences
  5

• Ensembl
  ENSMUSG00000122865 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000122865	Ensembl Gene Model | MGI Sequence Detail	20863	C57BL/6J
transcript	ENSMUST00000255162	Ensembl | MGI Sequence Detail	1050	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm69500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11867	Chr1:60952494-60952507 (-)	7,201 bp
Tssr11866	Chr1:60950076-60950120 (-)	9,604 bp
Tssr11865	Chr1:60949880-60949905 (-)	9,809 bp
Tssr11864	Chr1:60948034-60948038 (-)	11,666 bp
Tssr11863	Chr1:60941693-60941697 (-)	18,007 bp