Gm69581 Gene Detail

Summary

• Symbol
  Gm69581
• Name
  predicted gene, 69581

• Feature Type
  lncRNA gene
• IDs
  MGI:7821975
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr1:40400464-40439583 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1377 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7821975	lncRNA gene	Chr1:40400464-40439583 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm69581
  

Sequences &
Gene Models

• All Sequences
  5

• Ensembl
  ENSMUSG00000123550 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000123550	Ensembl Gene Model | MGI Sequence Detail	39120	C57BL/6J
transcript	ENSMUST00000258971	Ensembl | MGI Sequence Detail	455	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm69581:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11424	Chr1:40437611-40437615 (-)	1,970 bp
Tssr11423	Chr1:40436688-40436699 (-)	2,889 bp
Tssr11422	Chr1:40436667-40436678 (-)	2,910 bp
Tssr11421	Chr1:40436633-40436663 (-)	2,935 bp
Tssr11420	Chr1:40432474-40432479 (-)	7,106 bp
Tssr11419	Chr1:40421652-40421657 (-)	17,928 bp
Tssr11418	Chr1:40420229-40420259 (-)	19,339 bp