Gm70246 Gene Detail

Summary

• Symbol
  Gm70246
• Name
  predicted gene, 70246

• Feature Type
  lncRNA gene
• IDs
  MGI:7823297
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr9:47450346-47545392 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2024 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7823297	lncRNA gene	Chr9:47450346-47545392 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm70246
  

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000143377 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000143377	Ensembl Gene Model | MGI Sequence Detail	95047	C57BL/6J
transcript	ENSMUST00000376476	Ensembl | MGI Sequence Detail	379	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm70246:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84922	Chr9:47450765-47450769 (+)	421 bp
Tssr84923	Chr9:47451913-47451932 (+)	1,577 bp
Tssr84924	Chr9:47455495-47455517 (+)	5,160 bp
Tssr84925	Chr9:47459235-47459245 (+)	8,894 bp
Tssr84926	Chr9:47461670-47461683 (+)	11,331 bp
Tssr84927	Chr9:47465653-47465657 (+)	15,309 bp
Tssr84928	Chr9:47480507-47480530 (+)	30,173 bp
Tssr84929	Chr9:47529935-47529979 (+)	79,611 bp
Tssr84930	Chr9:47534586-47534589 (+)	84,242 bp